Module setup 

Plugin setup and repair commands.

These are operational commands that check and mutate appdata, write .env files, and validate auth/port configuration before the server starts. Business logic stays in app.rs; this module is allowed to touch the filesystem and network only for diagnostics and setup purposes.

Enums

SetupCommand

Functions

apply_plugin_options

Translate Claude Code plugin options (CLAUDE_PLUGIN_OPTION_*) into the SOMA_* process env vars the binary reads, before Config::load() runs.

run_setup